I understand but this really defeats the purpose of having the CRON job run automatically.
BTW, I are REALLY disappointed that you have chosen to Base64 encrypt your sources. Makes troubleshooting a problem a lot more difficult than otherwise. In fact, had I known that ahead of time, I would have never purchased the product.
I have added a script that clears out the sitemap.html files before the runcrawl executes as a hack work around... I am not happy wth this as the script should be doing it, not my hack!